Mission items/Scriptures/Grimoires sometimes unable to be picked up

I had a few missions when various items, such as ammo boxes, med packs, scriptures and grimoires, are unable to be picked up from boxes or if its positioned on a shelf.

I even had a few times when a ammo pack is inside a container, with the said container being lodged into the wall or merged into the floor.

I can tag the items normally, but it wont give me an option to pick it up. The option to pick it up does not appear when being close to the item, or even on top of the item. It just lets me tag it and the “pick up” option does not show up either.

The bug seems to be a rare occassion thankfully if anything.